API

Import rapids-singlecell as:

import rapids_singlecell as rsc

• scanpy-GPU
  • Preprocessing pp
  • Tools: tl
  • Plotting
• squidpy-GPU: gr
  • rapids_singlecell.gr.spatial_autocorr
  • rapids_singlecell.gr.co_occurrence
  • rapids_singlecell.gr.ligrec
  • rapids_singlecell.gr.calculate_niche
• pertpy-GPU: ptg
  • Distance
  • GuideAssignment
  • Mixscape
• decoupler-GPU: dcg
  • rapids_singlecell.dcg.mlm
  • rapids_singlecell.dcg.ulm
  • rapids_singlecell.dcg.aucell
  • rapids_singlecell.dcg.waggr
  • rapids_singlecell.dcg.zscore
• Get object from AnnData: get
  • rapids_singlecell.get.aggregate
  • rapids_singlecell.get.anndata_to_GPU
  • rapids_singlecell.get.anndata_to_CPU
  • rapids_singlecell.get.X_to_GPU
  • rapids_singlecell.get.X_to_CPU