rapids_singlecell.pp.flag_gene_family

rapids_singlecell.pp.flag_gene_family(adata, *, gene_family_name, gene_family_prefix=None, gene_list=None)

Flags a gene or gene_family in .var with boolean. (e.g all mitochondrial genes). Please only choose gene_family prefix or gene_list

Parameters:

adata AnnData

AnnData object

gene_family_name str

name of columns in .var where you want to store informationa as a boolean

gene_family_prefix str (default: None)

prefix of the gene family (eg. mt- for all mitochondrial genes in mice)

gene_list list (default: None)

list of genes to flag in .var

Return type:

None

Returns:

adds the boolean column in .var